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Other libraries

Aside from the main 3 user facing libraries, Dyscolab mantains a number of other auxiliary and related ones:

  • symbolite: a minimalist symbolic python package used by Poincare, SimBio and Jablonski.
  • numbakit-ode: python implementation of different ODE integration methods using numba to speed up calculations.
  • scipy-events: functionality to listen for events during ODE integration in scipy.integrate.solve_ivp, used in poincare.SteadyState.
  • numbakit-anjit: an annotation aware numba jit decorator and manager object to handle Jit configuration.
  • biomodels: a python library to download models from BioModels.